NFcore::DORRxnClass Member List

This is the complete list of members for NFcore::DORRxnClass, including all inherited members.

aNFcore::ReactionClass [protected]
apply(vector< Molecule * > &product_molecules)NFcore::ReactionClass
argIndexIntoMappingSetNFcore::DORRxnClass [protected]
argMappedMoleculeNFcore::DORRxnClass [protected]
argScopeNFcore::DORRxnClass [protected]
baseRateNFcore::ReactionClass [protected]
baseRateParameterNameNFcore::ReactionClass [protected]
BASIC_RXNNFcore::ReactionClass [static]
cfNFcore::DORRxnClass [protected]
directAddForDebugging(Molecule *m)NFcore::DORRxnClass
DOR_RXNNFcore::ReactionClass [static]
DORreactantIndexNFcore::DORRxnClass [protected]
DORRxnClass(string name, double baseRate, string baseRateName, TransformationSet *transformationSet, CompositeFunction *function, vector< string > &lfArgumentPointerNameList, System *s)NFcore::DORRxnClass
evaluateLocalFunctions(MappingSet *ms)NFcore::DORRxnClass [protected, virtual]
fire(double random_A_number)NFcore::ReactionClass
fireCounterNFcore::ReactionClass [protected]
get_a() const NFcore::ReactionClass [inline]
getBaseRate() const NFcore::ReactionClass [inline]
getDORreactantPosition() const NFcore::DORRxnClass [inline, virtual]
getName() const NFcore::ReactionClass [inline]
getNumOfReactants() const NFcore::ReactionClass [inline]
getReactantCount(unsigned int reactantIndex) const NFcore::DORRxnClass [virtual]
getRxnId() const NFcore::ReactionClass [inline]
getRxnType() const NFcore::ReactionClass [inline]
init()NFcore::DORRxnClass [virtual]
isDimerStyleNFcore::ReactionClass [protected]
mappingSetNFcore::ReactionClass [protected]
molIterNFcore::ReactionClass [protected]
msNFcore::DORRxnClass [protected]
n_argMoleculesNFcore::DORRxnClass [protected]
n_reactantsNFcore::ReactionClass [protected]
nameNFcore::ReactionClass [protected]
NO_LIMITNFcore::ReactionClass [static]
notifyRateFactorChange(Molecule *m, int reactantIndex, int rxnListIndex)NFcore::DORRxnClass [virtual]
OBS_DEPENDENT_RXNNFcore::ReactionClass [static]
onTheFlyObservablesNFcore::ReactionClass [protected]
pickMappingSets(double randNumber) const NFcore::DORRxnClass [protected, virtual]
prepareForSimulation()NFcore::DORRxnClass [inline, virtual]
printDetails() const NFcore::DORRxnClass [virtual]
printFullDetails() const NFcore::DORRxnClass [inline, virtual]
printTreeForDebugging()NFcore::DORRxnClass
productsNFcore::ReactionClass [protected]
reactantListsNFcore::DORRxnClass [protected]
reactantTemplatesNFcore::ReactionClass [protected]
reactantTreeNFcore::DORRxnClass [protected]
ReactionClass(string name, double rate, string baseRateParameterName, TransformationSet *transformationSet, System *s)NFcore::ReactionClass
reactionTypeNFcore::ReactionClass [protected]
remove(Molecule *m, unsigned int reactantPos)NFcore::DORRxnClass [virtual]
resetBaseRateFromSystemParamter()NFcore::ReactionClass
rxnIdNFcore::ReactionClass [protected]
set_match(vector< MappingSet * > &match_set)NFcore::ReactionClass
setBaseRate(double newBaseRate, string newBaseRateName)NFcore::ReactionClass [inline]
setRxnId(int rxnId)NFcore::ReactionClass [inline]
setTotalRateFlag(bool totalRate)NFcore::ReactionClass [inline]
setTraversalLimit(int limit)NFcore::ReactionClass [inline]
systemNFcore::ReactionClass [protected]
tag()NFcore::ReactionClass [inline]
taggedNFcore::ReactionClass [protected]
test1(System *s)NFcore::DORRxnClass [static]
totalRateFlagNFcore::ReactionClass [protected]
transformationSetNFcore::ReactionClass [protected]
traversalLimitNFcore::ReactionClass [protected]
tryToAdd(Molecule *m, unsigned int reactantPos)NFcore::DORRxnClass [virtual]
turnOff_OnTheFlyObs()NFcore::ReactionClass [inline]
update_a()NFcore::DORRxnClass [virtual]
updatedComplexesNFcore::ReactionClass [protected]
~DORRxnClass()NFcore::DORRxnClass [virtual]
~ReactionClass()NFcore::ReactionClass [virtual]


Generated on Thu Dec 9 11:02:48 2010 for NFsim by  doxygen 1.5.4