NFcore::TemplateMolecule Member List

This is the complete list of members for NFcore::TemplateMolecule, including all inherited members.

addBond(string thisBsiteName, TemplateMolecule *t2, string bSiteName2)NFcore::TemplateMolecule
addBoundComponent(string cName)NFcore::TemplateMolecule
addComponentConstraint(string cName, string stateName)NFcore::TemplateMolecule
addComponentConstraint(string cName, int stateValue)NFcore::TemplateMolecule
addComponentExclusion(string cName, string stateName)NFcore::TemplateMolecule
addComponentExclusion(string cName, int stateValue)NFcore::TemplateMolecule
addConnectedTo(TemplateMolecule *t2, int otherConToIndex)NFcore::TemplateMolecule
addConnectedTo(TemplateMolecule *t2, int otherConToIndex, bool otherHasRxnCenter)NFcore::TemplateMolecule
addEmptyComponent(string cName)NFcore::TemplateMolecule
addMapGenerator(MapGenerator *mg)NFcore::TemplateMolecule
addSymBond(string thisBsiteName, string thisCompId, TemplateMolecule *t2, string bSiteName2)NFcore::TemplateMolecule
addSymCompConstraint(string cName, string uniqueId, int bondState, int stateConstraint)NFcore::TemplateMolecule
bind(TemplateMolecule *t1, string bSiteName1, string compId1, TemplateMolecule *t2, string bSiteName2, string compId2)NFcore::TemplateMolecule [static]
bondCompNFcore::TemplateMolecule [protected]
bondCompNameNFcore::TemplateMolecule [protected]
bondPartnerNFcore::TemplateMolecule [protected]
bondPartnerCompIndexNFcore::TemplateMolecule [protected]
bondPartnerCompNameNFcore::TemplateMolecule [protected]
canBeMappedToNFcore::TemplateMolecule [protected]
checkSymmetry(TemplateMolecule *tm1, TemplateMolecule *tm2, string bSite1, string bSite2)NFcore::TemplateMolecule [static]
checkSymmetryAroundBond(TemplateMolecule *tm1, TemplateMolecule *tm2, string bSite1, string bSite2)NFcore::TemplateMolecule [static]
clear()NFcore::TemplateMolecule
clearConnectedTo()NFcore::TemplateMolecule
clearTemplateOnly()NFcore::TemplateMolecule
compare(Molecule *m)NFcore::TemplateMolecule
compare(Molecule *m, ReactantContainer *rc, MappingSet *ms, bool holdMolClearToEnd=false)NFcore::TemplateMolecule
compIsAlwaysMappedNFcore::TemplateMolecule [protected]
compStateConstraint_CompNFcore::TemplateMolecule [protected]
compStateConstraint_ConstraintNFcore::TemplateMolecule [protected]
compStateExclusion_CompNFcore::TemplateMolecule [protected]
compStateExclusion_ExclusionNFcore::TemplateMolecule [protected]
connectedToNFcore::TemplateMolecule [protected]
connectedToHasRxnCenterNFcore::TemplateMolecule [protected]
contains(TemplateMolecule *tempMol)NFcore::TemplateMolecule
dNFcore::TemplateMolecule [protected, static]
EMPTYNFcore::TemplateMolecule [static]
emptyCompsNFcore::TemplateMolecule [protected]
FIND_ALLNFcore::TemplateMolecule [static]
getMoleculeType() const NFcore::TemplateMolecule [inline]
getMoleculeTypeName() const NFcore::TemplateMolecule
getN_connectedTo() const NFcore::TemplateMolecule [inline]
getN_mapGenerators() const NFcore::TemplateMolecule [inline]
getN_symCompBonds() const NFcore::TemplateMolecule [inline]
getN_symComps() const NFcore::TemplateMolecule [inline]
getNumDisjointSets(vector< TemplateMolecule * > &tMolecules, vector< vector< TemplateMolecule * > > &sets, vector< int > &uniqueSetId)NFcore::TemplateMolecule [static]
getPatternString()NFcore::TemplateMolecule
hasTraversedDownConnectedToNFcore::TemplateMolecule [protected]
hasTraversedDownSymNFcore::TemplateMolecule [protected]
hasVisitedBondNFcore::TemplateMolecule [protected]
hasVisitedThisNFcore::TemplateMolecule [protected]
isSymCompMappedNFcore::TemplateMolecule [protected]
isSymMapValid()NFcore::TemplateMolecule
mapGeneratorsNFcore::TemplateMolecule [protected]
matchMoleculeNFcore::TemplateMolecule [protected]
moleculeTypeNFcore::TemplateMolecule [protected]
n_bondsNFcore::TemplateMolecule [protected]
n_compStateConstraintNFcore::TemplateMolecule [protected]
n_compStateExclusionNFcore::TemplateMolecule [protected]
n_connectedToNFcore::TemplateMolecule [protected]
n_emptyCompsNFcore::TemplateMolecule [protected]
n_mapGeneratorsNFcore::TemplateMolecule [protected]
n_occupiedCompsNFcore::TemplateMolecule [protected]
n_symCompsNFcore::TemplateMolecule [protected]
n_totalCompsNFcore::TemplateMolecule [protected]
NO_CONSTRAINTNFcore::TemplateMolecule [static]
OCCUPIEDNFcore::TemplateMolecule [static]
occupiedCompsNFcore::TemplateMolecule [protected]
otherTemplateConnectedToIndexNFcore::TemplateMolecule [protected]
printDetails()NFcore::TemplateMolecule
printDetails(ostream &o)NFcore::TemplateMolecule
printErrorAndExit(string message)NFcore::TemplateMolecule
printPattern()NFcore::TemplateMolecule
printPattern(ostream &o)NFcore::TemplateMolecule
qNFcore::TemplateMolecule [protected, static]
SKIP_CONNECTED_TONFcore::TemplateMolecule [static]
symBondPartnerNFcore::TemplateMolecule [protected]
symBondPartnerCompIndexNFcore::TemplateMolecule [protected]
symBondPartnerCompNameNFcore::TemplateMolecule [protected]
symCompBoundStateNFcore::TemplateMolecule [protected]
symCompNameNFcore::TemplateMolecule [protected]
symCompStateConstraintNFcore::TemplateMolecule [protected]
symCompUniqueIdNFcore::TemplateMolecule [protected]
TemplateMolecule(MoleculeType *moleculeType)NFcore::TemplateMolecule
tmIterNFcore::TemplateMolecule [protected, static]
tmVecIterNFcore::TemplateMolecule [protected, static]
TotalTemplateMoleculeCountNFcore::TemplateMolecule [protected, static]
traverse(TemplateMolecule *tempMol, vector< TemplateMolecule * > &tmList, bool skipConnectedTo)NFcore::TemplateMolecule [static]
tryToMap(Molecule *toMap, string toMapComponent, Molecule *mappedFrom, string mappedFromComponent)NFcore::TemplateMolecule
uniqueTemplateIDNFcore::TemplateMolecule [protected]
~TemplateMolecule()NFcore::TemplateMolecule


Generated on Thu Dec 9 11:02:48 2010 for NFsim by  doxygen 1.5.4