/home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFreactions/mappings/mappingSet.hh

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#ifndef MAPPINGSET_HH_
#define MAPPINGSET_HH_





#include "../NFreactions.hh"

using namespace std;

namespace NFcore
{
        //Needs a forward declaration here
        class Mapping;
        class Transformation;



        class MappingSet
        {
                public:

                        MappingSet(unsigned int id, vector <Transformation *> &transformations);

                        ~MappingSet();


                        bool set(unsigned int mappingIndex, Molecule *m);


                        Mapping *get(unsigned int mappingIndex) { return mappings[mappingIndex]; }

                        void clear(); /*{
                                this->clonedMappingSet=NO_CLONE;
                                for(unsigned int t=0; t<n_mappings; t++) {
                                        mappings[t]->clear();
                                }

                        };*/



                        bool hasDeletionTransform() const { return isDeletion; };

                        unsigned int getId() const { return id; };

                        unsigned int getNumOfMappings() const { return n_mappings; };


                        unsigned int getClonedMapping() const { return clonedMappingSet; };
                        void clearClonedMapping() { this->clonedMappingSet=NO_CLONE; };


                        static const unsigned int NO_CLONE = -1;

                        static void clone(MappingSet *original, MappingSet *newClone);

                        void printDetails() const;
                        void printDetails(ostream &o) const;



                protected:

                        unsigned int id;


                        unsigned int n_mappings;

                        Mapping ** mappings;


                        bool isDeletion;


                        unsigned int clonedMappingSet;

        };

}




#endif /*MAPPINGSET_HH_*/

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