NFcore::TemplateMolecule Member List

This is the complete list of members for NFcore::TemplateMolecule, including all inherited members.

addBond(string thisBsiteName, TemplateMolecule *t2, string bSiteName2)	NFcore::TemplateMolecule
addBoundComponent(string cName)	NFcore::TemplateMolecule
addComponentConstraint(string cName, string stateName)	NFcore::TemplateMolecule
addComponentConstraint(string cName, int stateValue)	NFcore::TemplateMolecule
addComponentExclusion(string cName, string stateName)	NFcore::TemplateMolecule
addComponentExclusion(string cName, int stateValue)	NFcore::TemplateMolecule
addConnectedTo(TemplateMolecule *t2, int otherConToIndex)	NFcore::TemplateMolecule
addConnectedTo(TemplateMolecule *t2, int otherConToIndex, bool otherHasRxnCenter)	NFcore::TemplateMolecule
addEmptyComponent(string cName)	NFcore::TemplateMolecule
addMapGenerator(MapGenerator *mg)	NFcore::TemplateMolecule
addSymBond(string thisBsiteName, string thisCompId, TemplateMolecule *t2, string bSiteName2)	NFcore::TemplateMolecule
addSymCompConstraint(string cName, string uniqueId, int bondState, int stateConstraint)	NFcore::TemplateMolecule
bind(TemplateMolecule *t1, string bSiteName1, string compId1, TemplateMolecule *t2, string bSiteName2, string compId2)	NFcore::TemplateMolecule	[static]
bondComp	NFcore::TemplateMolecule	[protected]
bondCompName	NFcore::TemplateMolecule	[protected]
bondPartner	NFcore::TemplateMolecule	[protected]
bondPartnerCompIndex	NFcore::TemplateMolecule	[protected]
bondPartnerCompName	NFcore::TemplateMolecule	[protected]
canBeMappedTo	NFcore::TemplateMolecule	[protected]
checkSymmetry(TemplateMolecule *tm1, TemplateMolecule *tm2, string bSite1, string bSite2)	NFcore::TemplateMolecule	[static]
checkSymmetryAroundBond(TemplateMolecule *tm1, TemplateMolecule *tm2, string bSite1, string bSite2)	NFcore::TemplateMolecule	[static]
clear()	NFcore::TemplateMolecule
clearConnectedTo()	NFcore::TemplateMolecule
clearTemplateOnly()	NFcore::TemplateMolecule
compare(Molecule *m)	NFcore::TemplateMolecule
compare(Molecule *m, ReactantContainer *rc, MappingSet *ms, bool holdMolClearToEnd=false)	NFcore::TemplateMolecule
compIsAlwaysMapped	NFcore::TemplateMolecule	[protected]
compStateConstraint_Comp	NFcore::TemplateMolecule	[protected]
compStateConstraint_Constraint	NFcore::TemplateMolecule	[protected]
compStateExclusion_Comp	NFcore::TemplateMolecule	[protected]
compStateExclusion_Exclusion	NFcore::TemplateMolecule	[protected]
connectedTo	NFcore::TemplateMolecule	[protected]
connectedToHasRxnCenter	NFcore::TemplateMolecule	[protected]
contains(TemplateMolecule *tempMol)	NFcore::TemplateMolecule
d	NFcore::TemplateMolecule	[protected, static]
EMPTY	NFcore::TemplateMolecule	[static]
emptyComps	NFcore::TemplateMolecule	[protected]
FIND_ALL	NFcore::TemplateMolecule	[static]
getMoleculeType() const	NFcore::TemplateMolecule	[inline]
getMoleculeTypeName() const	NFcore::TemplateMolecule
getN_connectedTo() const	NFcore::TemplateMolecule	[inline]
getN_mapGenerators() const	NFcore::TemplateMolecule	[inline]
getN_symCompBonds() const	NFcore::TemplateMolecule	[inline]
getN_symComps() const	NFcore::TemplateMolecule	[inline]
getNumDisjointSets(vector< TemplateMolecule * > &tMolecules, vector< vector< TemplateMolecule * > > &sets, vector< int > &uniqueSetId)	NFcore::TemplateMolecule	[static]
getPatternString()	NFcore::TemplateMolecule
hasTraversedDownConnectedTo	NFcore::TemplateMolecule	[protected]
hasTraversedDownSym	NFcore::TemplateMolecule	[protected]
hasVisitedBond	NFcore::TemplateMolecule	[protected]
hasVisitedThis	NFcore::TemplateMolecule	[protected]
isSymCompMapped	NFcore::TemplateMolecule	[protected]
isSymMapValid()	NFcore::TemplateMolecule
mapGenerators	NFcore::TemplateMolecule	[protected]
matchMolecule	NFcore::TemplateMolecule	[protected]
moleculeType	NFcore::TemplateMolecule	[protected]
n_bonds	NFcore::TemplateMolecule	[protected]
n_compStateConstraint	NFcore::TemplateMolecule	[protected]
n_compStateExclusion	NFcore::TemplateMolecule	[protected]
n_connectedTo	NFcore::TemplateMolecule	[protected]
n_emptyComps	NFcore::TemplateMolecule	[protected]
n_mapGenerators	NFcore::TemplateMolecule	[protected]
n_occupiedComps	NFcore::TemplateMolecule	[protected]
n_symComps	NFcore::TemplateMolecule	[protected]
n_totalComps	NFcore::TemplateMolecule	[protected]
NO_CONSTRAINT	NFcore::TemplateMolecule	[static]
OCCUPIED	NFcore::TemplateMolecule	[static]
occupiedComps	NFcore::TemplateMolecule	[protected]
otherTemplateConnectedToIndex	NFcore::TemplateMolecule	[protected]
printDetails()	NFcore::TemplateMolecule
printDetails(ostream &o)	NFcore::TemplateMolecule
printErrorAndExit(string message)	NFcore::TemplateMolecule
printPattern()	NFcore::TemplateMolecule
printPattern(ostream &o)	NFcore::TemplateMolecule
q	NFcore::TemplateMolecule	[protected, static]
SKIP_CONNECTED_TO	NFcore::TemplateMolecule	[static]
symBondPartner	NFcore::TemplateMolecule	[protected]
symBondPartnerCompIndex	NFcore::TemplateMolecule	[protected]
symBondPartnerCompName	NFcore::TemplateMolecule	[protected]
symCompBoundState	NFcore::TemplateMolecule	[protected]
symCompName	NFcore::TemplateMolecule	[protected]
symCompStateConstraint	NFcore::TemplateMolecule	[protected]
symCompUniqueId	NFcore::TemplateMolecule	[protected]
TemplateMolecule(MoleculeType *moleculeType)	NFcore::TemplateMolecule
tmIter	NFcore::TemplateMolecule	[protected, static]
tmVecIter	NFcore::TemplateMolecule	[protected, static]
TotalTemplateMoleculeCount	NFcore::TemplateMolecule	[protected, static]
traverse(TemplateMolecule *tempMol, vector< TemplateMolecule * > &tmList, bool skipConnectedTo)	NFcore::TemplateMolecule	[static]
tryToMap(Molecule *toMap, string toMapComponent, Molecule *mappedFrom, string mappedFromComponent)	NFcore::TemplateMolecule
uniqueTemplateID	NFcore::TemplateMolecule	[protected]
~TemplateMolecule()	NFcore::TemplateMolecule

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