NFsim Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

NFcore::AddMoleculeTransform
AgentCell
NFcore::BasicRxnClass
NFcore::BindingSeparateComplexTransform
NFcore::BindingTransform
NFcore::Complex	Container to dynamically keep track of all system complexes
NFcore::ComplexList	Container to organize all system complexes
NFinput::component	Maintains information about a component of a TemplateMolecule
NFcore::CompositeFunction
ConstantEnvironment
NFcore::DecrementStateTransform
NFcore::DirectSelector
NFcore::DORRxnClass
NFcore::DumpSystem	Class for outputting the state of the system
NFcore::EmptyTransform
Environment
NFcore::FuncFactory	Parses mathmatical functions that can be easily used anywhere
NFcore::FunctionalRxnClass
NFcore::FunctionReference
ChemotaxisUtil::GammaSampler
NFcore::GlobalFunction	Defines functions to be used globally in a simulation
NFcore::IncrementStateTransform
IsInWrongComplex
job
LinearEnvironment
NFcore::LocalFunction
NFcore::LocalFunctionReference
NFcore::LogClassSelector
NFcore::MapGenerator	Knows how to assign mappings in a MappingSet to a particular Molecule
NFcore::Mapping	Keeps a pointer to a molecule and remembers a single component to act on
NFcore::MappingSet	Keeps a list of mappings needed by a particular list of reactants
NFcore::MMRxnClass
model
NFcore::Molecule	Each molecule in the system is represented by an instance of this
NFcore::MoleculeList	Keeps a set of molecules neatly for a MoleculeType
NFcore::MoleculesObservable
NFcore::MoleculeType	Keeps track of the types of molecules that can exist
msgtype
MTRand
MTRand53
MTRand_closed
MTRand_int32
MTRand_open
NFstream
NFcore::Observable	Tracks the counts of predefined observables in the simulation
NFcore::Outputter
NFcore::ReactantContainer	Interface for all containers of Reactants (MappingSets) needed by ReactionClasses
NFcore::ReactantList	Maintains a list of MappingSets needed by ReactionClass
NFcore::ReactantTree	Maintains a tree of MappingSets needed by Distribution of Rates Reactions
NFcore::ReactionClass	Abstract Base Class that defines the interface for all reaction rules
NFcore::ReactionSelector
NFcore::RemoveMoleculeTransform
scan
NFcore::SpeciesCreator
NFcore::SpeciesObservable
NFcore::StateChangeTransform
NFcore::StateCounter
NFcore::System	The main class that begins and runs simulations
NFcore::TemplateMolecule	Used for matching Molecule objects to the given pattern
TiXmlAttribute
TiXmlAttributeSet
TiXmlBase
TiXmlComment
TiXmlCursor
TiXmlDeclaration
TiXmlDocument
TiXmlElement
TiXmlHandle
TiXmlNode
TiXmlOutStream
TiXmlParsingData
TiXmlPrinter
TiXmlString
TiXmlText
TiXmlUnknown
TiXmlVisitor
NFcore::Transformation
NFcore::TransformationFactory
NFcore::TransformationSet	Maintains a set of Transformation objects for a ReactionClass
NFcore::UnbindingTransform

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