/home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFtest/simple_system/simple_system.hh

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#ifndef SIMPLE_SYSTEM_HH_
#define SIMPLE_SYSTEM_HH_



//The two header files listed here are all that we need to set up and
//run a simple simulation with basic reactions.
#include "../../NFcore/NFcore.hh"
#include "../../NFreactions/NFreactions.hh"
#include "../../NFreactions/reactions/reaction.hh"


//NFcore is the primary namespace of the NFsim program.  It contains
//all the basic classes and functions for creating, running, and
//outputting a given system.  Be sure to use this namespace!
using namespace NFcore;




namespace NFtest_ss
{


        void run();



        MoleculeType * createX(System *s);

        MoleculeType * createY(System *s);




        ReactionClass * createReactionXDephos(MoleculeType *molX, double rate);

        ReactionClass * createReactionXYbind(MoleculeType *molX,MoleculeType *molY, double rate);

        ReactionClass * createReactionXYunbind(MoleculeType *molX, MoleculeType *molY, double rate);

        ReactionClass * createReactionYphosX(MoleculeType *molX, MoleculeType *molY, double rate);




        void addObs(System * s, MoleculeType *molX, MoleculeType *molY);
}


#endif /*SIMPLE_SYSTEM_HH_*/

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