NFcore::DORRxnClass Class Reference

#include <reaction.hh>

Inheritance diagram for NFcore::DORRxnClass:

List of all members.

Public Member Functions
	DORRxnClass (string name, double baseRate, string baseRateName, TransformationSet *transformationSet, CompositeFunction *function, vector< string > &lfArgumentPointerNameList, System *s)
virtual	~DORRxnClass ()
virtual void	init ()
virtual void	prepareForSimulation ()
virtual bool	tryToAdd (Molecule *m, unsigned int reactantPos)
virtual void	remove (Molecule *m, unsigned int reactantPos)
virtual double	update_a ()
virtual int	getDORreactantPosition () const
virtual void	notifyRateFactorChange (Molecule *m, int reactantIndex, int rxnListIndex)
virtual unsigned int	getReactantCount (unsigned int reactantIndex) const
virtual void	printDetails () const
virtual void	printFullDetails () const
void	directAddForDebugging (Molecule *m)
void	printTreeForDebugging ()
Static Public Member Functions
static void	test1 (System *s)
Protected Member Functions
virtual double	evaluateLocalFunctions (MappingSet *ms)
virtual void	pickMappingSets (double randNumber) const
Protected Attributes
ReactantList **	reactantLists
ReactantTree *	reactantTree
MappingSet *	ms
CompositeFunction *	cf
int	DORreactantIndex
int	n_argMolecules
int *	argIndexIntoMappingSet
Molecule **	argMappedMolecule
int *	argScope

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Constructor & Destructor Documentation

DORRxnClass::DORRxnClass	(	string	name,
		double	baseRate,
		string	baseRateName,
		TransformationSet *	transformationSet,
		CompositeFunction *	function,
		vector< string > &	lfArgumentPointerNameList,
		System *	s
	)

Step 3: Wheh! now we can finally get on the business of creating the reactant lists and the reactant tree and setting the usual reactionClass parameters

DORRxnClass::~DORRxnClass

(

)

[virtual]

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Member Function Documentation

void DORRxnClass::init

(

)

[virtual]

Implements NFcore::ReactionClass.

virtual void NFcore::DORRxnClass::prepareForSimulation

(

)

[inline, virtual]

Implements NFcore::ReactionClass.

bool DORRxnClass::tryToAdd	(	Molecule *	m,
		unsigned int	reactantPos
	)			[virtual]

Implements NFcore::ReactionClass.

void DORRxnClass::remove	(	Molecule *	m,
		unsigned int	reactantPos
	)			[virtual]

Implements NFcore::ReactionClass.

double DORRxnClass::update_a

(

)

[virtual]

Implements NFcore::ReactionClass.

virtual int NFcore::DORRxnClass::getDORreactantPosition

(

)

const [inline, virtual]

Reimplemented from NFcore::ReactionClass.

void DORRxnClass::notifyRateFactorChange	(	Molecule *	m,
		int	reactantIndex,
		int	rxnListIndex
	)			[virtual]

Implements NFcore::ReactionClass.

unsigned int DORRxnClass::getReactantCount

(

unsigned int

reactantIndex

)

const [virtual]

Implements NFcore::ReactionClass.

void DORRxnClass::printDetails

(

)

const [virtual]

Reimplemented from NFcore::ReactionClass.

virtual void NFcore::DORRxnClass::printFullDetails

(

)

const [inline, virtual]

Implements NFcore::ReactionClass.

void NFcore::DORRxnClass::directAddForDebugging

(

Molecule *

m

)

void NFcore::DORRxnClass::printTreeForDebugging

(

)

static void NFcore::DORRxnClass::test1

(

System *

s

)

[static]

double DORRxnClass::evaluateLocalFunctions

(

MappingSet *

ms

)

[protected, virtual]

void DORRxnClass::pickMappingSets

(

double

randNumber

)

const [protected, virtual]

Implements NFcore::ReactionClass.

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Member Data Documentation

ReactantList** NFcore::DORRxnClass::reactantLists [protected]

ReactantTree* NFcore::DORRxnClass::reactantTree [protected]

MappingSet* NFcore::DORRxnClass::ms [protected]

CompositeFunction* NFcore::DORRxnClass::cf [protected]

int NFcore::DORRxnClass::DORreactantIndex [protected]

int NFcore::DORRxnClass::n_argMolecules [protected]

int* NFcore::DORRxnClass::argIndexIntoMappingSet [protected]

Molecule** NFcore::DORRxnClass::argMappedMolecule [protected]

int* NFcore::DORRxnClass::argScope [protected]

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The documentation for this class was generated from the following files:

• /home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFreactions/reactions/reaction.hh
• /home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFreactions/reactions/DORreaction.cpp

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