NFcore::BasicRxnClass Class Reference

#include <reaction.hh>

Inheritance diagram for NFcore::BasicRxnClass:

List of all members.

Public Member Functions
	BasicRxnClass (string name, double baseRate, string baseRateName, TransformationSet *transformationSet, System *s)
virtual	~BasicRxnClass ()
virtual void	init ()
virtual void	prepareForSimulation ()
virtual bool	tryToAdd (Molecule *m, unsigned int reactantPos)
virtual void	remove (Molecule *m, unsigned int reactantPos)
virtual double	update_a ()
virtual void	notifyRateFactorChange (Molecule *m, int reactantIndex, int rxnListIndex)
virtual unsigned int	getReactantCount (unsigned int reactantIndex) const
virtual void	printFullDetails () const
Protected Member Functions
virtual void	pickMappingSets (double randNumber) const
Protected Attributes
ReactantList **	reactantLists
ReactantList *	rl
MappingSet *	ms

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Constructor & Destructor Documentation

BasicRxnClass::BasicRxnClass	(	string	name,
		double	baseRate,
		string	baseRateName,
		TransformationSet *	transformationSet,
		System *	s
	)

BasicRxnClass::~BasicRxnClass

(

)

[virtual]

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Member Function Documentation

void BasicRxnClass::init

(

)

[virtual]

Implements NFcore::ReactionClass.

void BasicRxnClass::prepareForSimulation

(

)

[virtual]

Implements NFcore::ReactionClass.

bool BasicRxnClass::tryToAdd	(	Molecule *	m,
		unsigned int	reactantPos
	)			[virtual]

Implements NFcore::ReactionClass.

void BasicRxnClass::remove	(	Molecule *	m,
		unsigned int	reactantPos
	)			[virtual]

Implements NFcore::ReactionClass.

virtual double NFcore::BasicRxnClass::update_a

(

)

[inline, virtual]

Implements NFcore::ReactionClass.

Reimplemented in NFcore::FunctionalRxnClass, and NFcore::MMRxnClass.

void BasicRxnClass::notifyRateFactorChange	(	Molecule *	m,
		int	reactantIndex,
		int	rxnListIndex
	)			[virtual]

Implements NFcore::ReactionClass.

unsigned int BasicRxnClass::getReactantCount

(

unsigned int

reactantIndex

)

const [virtual]

Implements NFcore::ReactionClass.

void BasicRxnClass::printFullDetails

(

)

const [virtual]

Implements NFcore::ReactionClass.

void BasicRxnClass::pickMappingSets

(

double

randNumber

)

const [protected, virtual]

Implements NFcore::ReactionClass.

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Member Data Documentation

ReactantList** NFcore::BasicRxnClass::reactantLists [protected]

ReactantList* NFcore::BasicRxnClass::rl [protected]

MappingSet* NFcore::BasicRxnClass::ms [protected]

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The documentation for this class was generated from the following files:

• /home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFreactions/reactions/reaction.hh
• /home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFreactions/reactions/reaction.cpp

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