NFsim: /home/msneddon/eclipse/galileoSR1_cpp/workspace/NFsim/src/NFtest/tlbr/tlbr.hh Source File

00001 #ifndef TLBR_HH_
00002 #define TLBR_HH_
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00008 #include "../../NFinput/NFinput.hh"
00009 #include "../../NFcore/NFcore.hh"
00010 #include "../../NFutil/NFutil.hh"
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00016 namespace NFtest_tlbr {
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00018         void run(map<string,string> &argMap);
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00020         void runSystem(int n_L, int n_R, double cTot, double beta, double koff,
00021                         string outputFileName, double simTime, double dt,
00022                         bool outputObservables, bool outputAvg, bool outputFinalDist);
00023 
00024         MoleculeType * createL(System * s, int count);
00025         MoleculeType * createR(System * s, int count);
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00027         void createFreeBindingRxns(System * s, MoleculeType * L, MoleculeType * R, double rate);
00028         void createUnbindingRxns(System * s, MoleculeType * R, double rate);
00029         void createCrossLinkingRxns(System * s, MoleculeType * L, MoleculeType *R, double rate);
00030 }
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00044 #endif /*TLBR_HH_*/