- a -

• Accept() : TiXmlNode , TiXmlElement , TiXmlText , TiXmlDeclaration , TiXmlComment , TiXmlUnknown , TiXmlDocument
• add() : NFcore::Observable , NFcore::StateCounter
• Add() : TiXmlAttributeSet
• addAddMolecule() : NFcore::TransformationSet
• addAllToObservables() : NFcore::MoleculeType
• addBindingSeparateComplexTransform() : NFcore::TransformationSet
• addBindingTransform() : NFcore::TransformationSet
• addBond() : NFcore::TemplateMolecule
• addBoundComponent() : NFcore::TemplateMolecule
• addComponentConstraint() : NFcore::TemplateMolecule
• addComponentExclusion() : NFcore::TemplateMolecule
• addCompositeFunction() : NFcore::System
• addConnectedTo() : NFcore::TemplateMolecule
• addDecrementStateTransform() : NFcore::TransformationSet
• addDeleteMolecule() : NFcore::TransformationSet
• addDependentRxn() : NFcore::Observable
• addEmptyComponent() : NFcore::TemplateMolecule
• addEquivalentComponents() : NFcore::MoleculeType
• addGlobalFunction() : NFcore::System
• addIncrementStateTransform() : NFcore::TransformationSet
• addLocalFunc_TypeI() : NFcore::MoleculeType
• addLocalFunc_TypeII() : NFcore::MoleculeType
• addLocalFunction() : NFcore::System
• addLocalFunctionReference() : NFcore::TransformationSet
• addMapGenerator() : NFcore::TemplateMolecule
• addMoleculeToRunningSystem() : NFcore::MoleculeType
• AddMoleculeTransform() : NFcore::AddMoleculeTransform
• addMoleculeType() : NFcore::System
• addMolObs() : NFcore::MoleculeType
• addNecessaryUpdateReaction() : NFcore::System
• addObservableForOutput() : NFcore::System
• addOutputter() : NFcore::System
• addParameter() : NFcore::System
• addReaction() : NFcore::System
• addReactionClass() : NFcore::MoleculeType
• addReferenceToMyself() : NFcore::Observable
• addStateChangeTransform() : NFcore::TransformationSet
• addSymBond() : NFcore::TemplateMolecule
• addSymCompConstraint() : NFcore::TemplateMolecule
• addTemplateMolecule() : NFcore::MoleculeType
• addToObservables() : NFcore::MoleculeType , NFcore::Molecule
• addTypeIMoleculeDependency() : NFcore::LocalFunction , NFcore::CompositeFunction
• addUnbindingTransform() : NFcore::TransformationSet
• AgentCell() : AgentCell
• append() : TiXmlString
• apply() : NFcore::EmptyTransform , NFcore::IncrementStateTransform , NFcore::ReactionClass , NFcore::LocalFunctionReference , NFcore::StateChangeTransform , NFcore::AddMoleculeTransform , NFcore::RemoveMoleculeTransform , NFcore::BindingSeparateComplexTransform , NFcore::Transformation , NFcore::DecrementStateTransform , NFcore::BindingTransform , NFcore::UnbindingTransform
• assign() : TiXmlString
• at() : TiXmlString , NFcore::MoleculeList
• attatchRxn() : NFcore::GlobalFunction
• Attribute() : TiXmlElement

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